Hardware:
- 5 Offline analysis computers (OA1-5)
- Remote access to workstation with high computation power (Amira, Imaris, NIS-Elements denoising AI)
- overview and technical specifications of available hardware [PDF]
To get access to the workstation and OA computers remotely, users outside the Faculty of Science at BIOCEV need to contact Dalibor Pánek, dalibor.panek@natur.cuni.cz. Please, provide your BIOCEV user name for access via VPN and/or IP address for direct access from computers at BIOCEV.
Software:
Commercial software |
| Amira | |
| Imaris | |
| Kaluza | - 10 floating licenses available for your personal PCs
available as well on OA5 PC (personal PCs preferred – users using FlowJo are therefore not blocked)
- manual for remote access [PDF]
|
| FlowJo | |
| Huygens | - 1 license available on Metacentrum via OA1 PC (for access, Huygens must be reserved in advance)
- for setting up connection to Metacentrum refer to Huygens manual [PDF]
- for remote access to OA1 PC refer to general manual [PDF]
|
| NIS-Elements (with AI) | - 1 license available via dongle server (once installed on personal PC, dongle can be “borrowed” from server)
- pre-installed on Workstation1 and OA2 PC (reservation required)
- for remote access refer to general manual [PDF]
- for dongle server setup refer to dongle server manual [PDF]
|
| Matlab | - available on OA1-4 PCs
currently installed toolboxes: Curve Fitting, Image Processing, Parallel Computing, Signal Processing
- all toolboxes are available, just contact member of IMCF for upgrade
- for remote access refer to general manual [PDF]
|
| LabVIEW | - home-made tools “TTTR Data Analysis” and “Data analysis_18” for FLIM and point and line-scan FCS data analysis
- available on OA3 PC
- for remote access refer to general manual [PDF]
|
Installed freeware tools |
| FIJI | - available on OA1-4 and most microscopic computers
|
| ICY | |
