Hardware:
- 5 Offline analysis computers (OA1-5)
- Remote access to workstations with high computation power (with available leading-edge Image Analysis software: Amira, Imaris, NIS-Elements AI, Huygens)
- overview and technical specifications of available hardware [PDF]
To get access to workstations and OA computers remotely, users outside the Faculty of Science at BIOCEV need to contact Dalibor Pánek, dalibor.panek@natur.cuni.cz. Please, provide your BIOCEV user name for access via VPN and/or IP address for direct access from computers at BIOCEV.
Software:
Software availability on IMCF computers |
| OA1 | OA2 | OA3 | OA4 | OA5 | Workstation 1 | Workstation 2 | Workstation 3 |
Amira | | ✔ | | ✔ | | ✔ | ✔ | |
Imaris | | ✔ | | | | ✔ | ✔ | |
NIS-Elements | ✔ | ✔ | ✔ | ✔ | | ✔ | ✔ | |
Huygens | | | | | | | | ✔ |
LabVIEW | | | ✔ | | | | | |
Matlab | ✔ | ✔ | ✔ | ✔ | | ✔ | | |
FIJI | ✔ | ✔ | ✔ | ✔ | | ✔ | ✔ | ✔ |
ICY | ✔ | ✔ | ✔ | ✔ | | | | |
Kaluza | | | | | ✔ | | | |
FlowJo | | | | | ✔ | | | |
Commercial software |
Amira | |
Imaris | |
Kaluza | - 10 floating licenses available for your personal PCs
available as well on OA5 PC (personal PCs preferred – users using FlowJo are therefore not blocked)
- manual for remote access [PDF]
|
FlowJo |
|
Huygens | |
NIS-Elements (with AI) | - 2 licenses can be used at the same time
- pre-installed on Workstation1, Workstation2, OA1, OA2, and OA3 PCs (reservation required)
- for remote access to our workstations refer to general manual [PDF]
|
Matlab | - available on OA1-4 PCs and Workstation1
currently installed toolboxes: Curve Fitting, Image Processing, Parallel Computing, Signal Processing
- all toolboxes are available, just contact member of IMCF for upgrade
- for remote access refer to general manual [PDF]
|
LabVIEW | - home-made tools “TTTR Data Analysis” and “Data analysis_18” for FLIM and point and line-scan FCS data analysis
- available on OA3 PC
- for remote access refer to general manual [PDF]
|
Installed freeware tools |
FIJI | - available on OA1-4, Workstation1-3, and most microscopic computers
|
ICY | |