Data analysis tools

Hardware:

  • 5 Offline analysis computers (OA1-5)
  • Remote access to workstations with high computation power (with available leading-edge Image Analysis software: Amira, Imaris, NIS-Elements AI, Huygens)
  • overview and technical specifications of available hardware [PDF]

To get access to workstations and OA computers remotely, users outside the Faculty of Science at BIOCEV need to contact Dalibor Pánek, dalibor.panek@natur.cuni.cz. Please, provide your BIOCEV user name for access via VPN and/or IP address for direct access from computers at BIOCEV.

Software:

Software availability on IMCF computers

OA1OA2OA3OA4OA5Workstation 1Workstation 2Workstation 3
Amira
Imaris
NIS-Elements
Huygens
LabVIEW
Matlab
FIJI
ICY
Kaluza
FlowJo

Commercial software

Amira
Imaris
Kaluza
  • 10 floating licenses available for your personal PCs
    available as well on OA5 PC (personal PCs preferred – users using FlowJo are therefore not blocked)
  • manual for remote access [PDF]
FlowJo
Huygens
NIS-Elements (with AI)
  • 2 licenses can be used at the same time
  • pre-installed on Workstation1, Workstation2, OA1, OA2, and OA3 PCs (reservation required)
  • for remote access to our workstations refer to general manual [PDF]
Matlab
  • available on OA1-4 PCs and Workstation1
    currently installed toolboxes: Curve Fitting, Image Processing, Parallel Computing, Signal Processing
  • all toolboxes are available, just contact member of IMCF for upgrade
  • for remote access refer to general manual [PDF]
LabVIEW
  • home-made tools “TTTR Data Analysis” and “Data analysis_18” for FLIM and point and line-scan FCS data analysis
  • available on OA3 PC
  • for remote access refer to general manual [PDF]

Installed freeware tools

FIJI
  • available on OA1-4, Workstation1-3, and most microscopic computers
ICY
  • available on OA1-4