Hardware:
- 5 Offline analysis computers (OA1-5)
- Remote access to workstations with high computation power (with available leading-edge Image Analysis software: Amira, Imaris, NIS-Elements AI, Huygens)
- overview and technical specifications of available hardware [PDF]
To get access to workstations and OA computers remotely, users outside the Faculty of Science at BIOCEV need to contact Dalibor Pánek, dalibor.panek@natur.cuni.cz. Please, provide your BIOCEV user name for access via VPN and/or IP address for direct access from computers at BIOCEV.
Software:
Software availability on IMCF computers |
| OA1 | OA2 | OA3 | OA4 | OA5 | Workstation 1 | Workstation 2 | Workstation 3 |
| Amira | | ✔ | | ✔ | | ✔ | ✔ | |
| Imaris | | ✔ | | | | ✔ | ✔ | |
| NIS-Elements | ✔ | ✔ | ✔ | ✔ | | ✔ | ✔ | |
| Huygens | | | | | | | | ✔ |
| LabVIEW | | | ✔ | | | | | |
| Matlab | ✔ | ✔ | ✔ | ✔ | | ✔ | | |
| FIJI | ✔ | ✔ | ✔ | ✔ | | ✔ | ✔ | ✔ |
| ICY | ✔ | ✔ | ✔ | ✔ | | | | |
| Kaluza | | | | | ✔ | | | |
| FlowJo | | | | | ✔ | | | |
Commercial software |
| Amira | |
| Imaris | |
| Kaluza | - 10 floating licenses available for your personal PCs
available as well on OA5 PC (personal PCs preferred – users using FlowJo are therefore not blocked)
- manual for remote access [PDF]
|
| FlowJo |
|
| Huygens | |
| NIS-Elements (with AI) | - 2 licenses can be used at the same time
- pre-installed on Workstation1, Workstation2, OA1, OA2, and OA3 PCs (reservation required)
- for remote access to our workstations refer to general manual [PDF]
|
| Matlab | - available on OA1-4 PCs and Workstation1
currently installed toolboxes: Curve Fitting, Image Processing, Parallel Computing, Signal Processing
- all toolboxes are available, just contact member of IMCF for upgrade
- for remote access refer to general manual [PDF]
|
| LabVIEW | - home-made tools “TTTR Data Analysis” and “Data analysis_18” for FLIM and point and line-scan FCS data analysis
- available on OA3 PC
- for remote access refer to general manual [PDF]
|
Installed freeware tools |
| FIJI | - available on OA1-4, Workstation1-3, and most microscopic computers
|
| ICY | |
